Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
LIHC rs56311324 chr11:82768589 C/A 2.98E-5 367 19.58 20.55 3.4 KM Plot
LIHC rs56386950 chr2:169085193 G/C 3.04E-6 368 19.7 21.17 15.47 KM Plot
LIHC rs56724356 chr7:90320620 GA/G 4.77E-5 361 14.6 19.42 20.58 KM Plot
LIHC rs56942634 chr13:108913937 C/G 3.56E-5 356 20.7 18.48 7.13 KM Plot
LIHC rs5744217 chr20:37001341 T/C 1.78E-15 362 20.03 18.8 0.53 KM Plot
LIHC rs57570463 chr15:91751559 C/G 1.84E-5 367 20.5 14.6 9.87 KM Plot
LIHC rs57671539 chr2:37122198 C/T 8.8E-6 368 20.45 12.17 8.73 KM Plot
LIHC rs57778143 chr5:126173656 T/C 7.57E-6 361 20.03 12.67 2.23 KM Plot
LIHC rs57884362 chr2:37109424 T/C 9.47E-6 366 20.45 12.17 8.73 KM Plot
LIHC rs57980863 chr5:94775874 CA/C 5.77E-6 360 19.3 21 2.18 KM Plot
LIHC rs58103919 chr5:126173488 T/A 3.42E-5 364 19.83 12.17 2.23 KM Plot
LIHC rs58418743 chr5:126174121 C/G 3.42E-5 365 19.87 12.17 2.23 KM Plot
LIHC rs58458484 chr14:73617754 C/T 3.87E-6 365 20.6 13.3 4.93 KM Plot
LIHC rs5846544 chr3:7933399 G/GT 1.88E-7 368 19.17 23.18 3.03 KM Plot
LIHC rs58755600 chr20:34562901 C/A 3.8E-6 363 19.6 19.65 1.03 KM Plot